ASHS 2024 Conference

Pigeonpea [Cajanus cajan (L.) Mill.] is an important legume consumed in the Caribbean basin. Cultivars with indeterminate flowering habit have sensitivity to the photoperiod in Puerto Rico. The objectives of this research were to: (1) develop two breeding lines with indeterminate flowering habit that can be planted year-round, and (2) evaluate their agronomic performance. IIPG-7 and IIPG-11 breeding lines, derived from the bi-parental cross ‘ICPL 86012’/‘Guerrero’, were developed by pedigree and bulk breeding methods. Both breeding lines, their parents, and cultivars checks were tested in field trials in Isabela and Lajas, Puerto Rico in 2022 and 2023. IIPG-7 and IIPG-11 were early genotypes that initiated flowering between 73-84 days after planting (dap), and reached harvesting maturity at 121-127 dap compared with indeterminate cultivars ‘Ariel’, ‘Blanco Yauco’, ‘Kaki’, ‘Pinto Berrocales’, and ‘Super Pinto’ that initiated flowering between 91 to 102 dap and reached maturity at 138-148 dap. These cultivars had seed yield values over 1,000 kg/ha while IIPG-7 and IIPG-11 produced between 721 to 1,010 kg/ha under short day conditions in both locations. In contrast, IIPG-7 and IIPG-11 were the only indeterminate genotypes that initiated flowering between 42-88 dap, reached maturity between 88-172 dap, and seed yields varied from 626 to 2,449 kg/ha under long day conditions in Isabela and Lajas. These new breeding lines can be used to develop pigeonpea cultivars with insensitivity to the photoperiod.

Consumers are dissatisfied with the flavor of modern commercial tomatoes; however, modern tomato varieties have many desirable agronomic traits such as shelf life, disease resistance and yield. The flavor deficiency in modern tomatoes is due to a cumulative loss of superior alleles affecting flavor volatiles while breeding for other traits. The lack of breeder focus on the consumer is largely due to the genetic complexity of the tomato flavor phenotype as well as a lack of a simple assay that can define consumer preferences. Tomato flavor is a result of interactions between sugars, acids and aroma volatiles, with volatile compounds giving the tomato fruit its characteristic aroma and flavor. We have quantified 68 flavor biochemicals in over 700 tomato varieties, including modern, heirloom and ancestral tomato accessions. Over 160 of these varieties were evaluated by a large consumer panel for fruit flavor quality traits including overall liking. Genome Wide Association Studies (GWAS) identified genetic loci associated with altered levels of acids, sugars and aroma volatiles. We have used marker-assisted breeding to introgress loci associated with flavor biochemical levels from heirloom varieties into modern tomato varieties. Introduction of seven flavor loci affecting a variety of flavor volatiles into a modern tomato variety has resulted in altered flavor volatile profiles and improved flavor as assessed by a consumer panel.

Understanding the genetic basis of mineral element contents in crops is crucial for improving their nutritional value. This study conducted a comprehensive Genome-Wide Association Study (GWAS) to identify single nucleotide polymorphisms (SNPs) associated with the accumulation of 14 essential mineral elements in spinach (Spinacia oleracea). Utilizing a diverse collection of 281 spinach accessions, we assessed the content of Boron (B), Calcium (Ca), Cobalt (Co), Copper (Cu), Iron (Fe), Potassium (K), Magnesium (Mg), Manganese (Mn), Molybdenum (Mo), Sodium (Na), Nickel (Ni), Phosphorus (P), Sulfur (S), and Zinc (Zn), expressed in micrograms or milligrams per gram of dry weight (µg/gDW or mg/gDW). Genotyping revealed 83,952 SNPs across the spinach genome, analyzed using GAPIT3 and TASSEL5 software platforms. Statistical models employed included General Linear Model (GLM), Mixed Linear Model (MLM), FarmCPU, and BLINK within GAPIT, alongside SMR and GLM in TASSEL. Our analysis uncovered 33 significant SNP-trait associations distributed among the minerals: one for B, Cu, P, and K; two for Ca, Ni, Fe, Zn, and S; three for Mo and Mg; four for Na and Co; five for Mn. These findings highlight the genetic diversity influencing mineral nutrient accumulation in spinach and offer valuable markers for breeding nutritionally enhanced spinach varieties.

Lettuce is one of the most important leafy vegetable crops world-wide. Salt stress adversely affects lettuce production, leading to considerable yield losses. Understanding the molecular mechanisms underlying the salt stress response is essential for breeding and development of lettuce cultivars with improved salt tolerance. Thus, the objective of this research was to identify differentially expressed genes (DEGs) in lettuce root and leaf tissues under salt stress and non-salt stress conditions. We have compared two salt-stress tolerant and two salt-sensitive accessions from crisphead and leaf horticultural types. Differential gene expression was compared between salt-tolerant and salt-sensitive accessions from the same horticultural type to minimize the effect of horticultural types on the comparison. In the root samples of the salt-tolerant accessions, we identified 3,789 and 4,022 DEGs, while for the salt-sensitive accessions 9,030 and 9,945 DEGs were identified, for the crisphead and leaf types, respectively. In leaf tissues, we observed 5,683 and 9,445 DEGs in the salt-tolerant accessions and 5,836 and 10,172 DEGs in the sensitive accessions, respectively, for the crisphead and leaf types. Thus, the number of DEGs was higher in sensitive accessions of both root and leaf tissues, with a notably greater disparity in root tissues. Functional annotations of the DEGs indicated stress response as a common biological process in both root and leaf tissues. Protein phosphatase inhibitor and peroxidase were the most significantly enriched molecular function terms in roots, while chaperone and glycosyltranferase molecular function terms were most significantly enriched in leaves. Gene Ontology (GO) enrichment analysis determined that genes related to the organic substance biosynthetic process were most significantly enriched in roots, while genes related to photosynthesis, response to light stimulus, chlorophyll binding and regulation of the jasmonic acid-mediated signaling pathway were significantly enriched in leaves. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed that plant hormone signal transduction, biosynthesis of secondary metabolites, and the MAPK signaling pathway were significantly enriched terms in both root and leaf tissues, while cysteine and methionine metabolism terms were most significantly enriched in roots and photosynthesis was most significantly enriched in leaves. Identification of the salt-stress responsive genes and the results on their expression patterns in salt-tolerant vs salt-sensitive cultivars obtained in the present study open the door for further functional analysis of these genes and their utilization in improving salt-stress tolerance in lettuce.

Cucumber (Cucumis sativus L.) is an economically important vegetable crop cultivated worldwide. Plant architectural traits, such as lateral branch number (LBN), vine length (VL), number of nodes (NN) and internode length (IL), may directly influence production practices, plant performances, fruit yield and quality. Despite their importance, investigation on the genetic basis of these traits in cucumber is limited. In this study, we conducted QTL mapping for VL, NN, IL and LBN using bi-parental F2, F2-derived F3 and recombinant inbred line (RIL) populations. There are significant positive correlations between LBN, VL and NN. Estimated board-sense heritability using entry-mean basis of the RIL population was high, ranging from 0.66 to 0.84. Two linkage maps were developed through genotyping-by-sequencing of 140 F2 individuals and Diversity Arrays Technology (DArTag) SNP genotyping of 135 RIL, containing 1912 and 334 SNP loci in seven linkage groups and spanning 1077 and 948 cM, respectively. QTL mapping analysis detected a total of 79 QTLs associated with the four traits in six environments or populations. Based on their physical locations, 66 QTLs were distributed in ten QTL clusters harboring four major-effect and six minor-effect QTLs. Each of the major- and minor-effect QTLs was supported by consistent and reproducible detection from at least three environments. Notably, major-effect QTLs for VL, NN and LBN were co-localized in two genomic regions on Chr1 (3.73 Mbp) and Chr6 (3.78 Mbp), and the major-effect QTL for IL was mapped in a 3.98-Mbp region on Chr5. These findings provide a framework for dissecting the genetic architecture of these complex traits, and valuable genetic information for cucumber breeders to employ molecular-assisted breeding approaches and develop improved varieties with enhanced productivity.

Meloidogyne incognita is the most common root-knot nematode found in agricultural regions worldwide. It can cause severe damage to many crops including sweetpotato storage roots, causing them to be unmarketable and resulting in significant yield losses. Identifying resistant crop varieties is one of the most effective ways to manage M. incognita. To identify germplasm with resistance to M. incognita, 47 sweetpotato accessions obtained from the USDA germplasm repository were screened in replicated greenhouse assays. ‘Beauregard’ was used as a susceptible control and ‘Regal’ as a resistant control. Sweetpotato slips containing 3 nodes each were planted in an autoclaved 1:1 mixture of sand and potting mix in Deepot D25L containers and arranged in a randomized block design, with 2-3 replicates per an accession. Two weeks after planting, each plant was inoculated with 10,000 M. incognita eggs. Eight weeks after inoculation, plants were harvested and rated for fibrosity, galling, number of egg masses, and eggs per gram of root. Resistance was defined as accessions with mean galling ≤ 10% and mean eggs per gram of root ≤ 500. Based on these criteria, 12 accessions were identified as having resistance to M. incognita.

Several studies have documented variation in potato germplasm for heat tolerance of leaf tissue. Most researchers have relied on screening for heat stress by exposing excised leaf tissue (grown under non-stress condition) to a short-term (minutes-hours) of acute heat stress (37-55C). It is well known that plants vary in their ability to acclimate to heat stress know as priming. This priming can enable plant to survive subsequent temperatures that are lethal to plants grown under non-stress condition. Our recent studies show that potato plants under prolonged heat stress (35/25C, day/night, for 3-5 weeks) newly developed leaves (acclimated) can maintain health under heat stress by modifying anatomy and physiology. These results show that potato plants have the ability to acclimate to heat stress that results in increased heat tolerance. In the present study, we screened to potato germplasm for heat tolerance of leaf tissue before and after heat acclimation. Ion leakage after exposure of excised leaf tissue to 50C, was used as a screening assay and a reduction in this leakage was used to assess the heat acclimation ability. Wide variety of potato germplasm including commercial cultivars and accessions of various wild species were screened. Our result show significant genotypic variations in acclimated and non-acclimated heat tolerance. Furthermore, the heat acclimation ability appears to be independent of non- acclimated heat tolerance. For example, certain clones of the species Solanum commersonnii had similar non-acclimated heat tolerance but large variation in acclimated tolerance was found among various clones of this species. Similar results were obtained for different clones of Solanum microdontum and Solanum kurtzianum. As expected, the cultivars Zarewo, DTO and Papa Cacho were found to have higher non-acclimated heat tolerance than the others, but Papa Cacho had the highest heat acclimation ability. Our results suggest that non-acclimated heat tolerance and acclimated heat tolerance are under separate genetic control and that selection for both non-acclimated and acclimated heat tolerance may be useful for successful breeding for heat tolerance of potato leaf tissue.